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Old 01-30-2017, 05:09 AM   #1
Flo2000
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Location: Germany

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Default basecalling/demultiplexing NxtSeq runs under Windows

Hi everybody,

it will take some additional weeks before we get our linux server...is there a possibility to do basecalling/demultiplexing of our NxtSeq run on a Windows machine if you don't want to use Cygwin for that single purpose?

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Flo
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Old 01-30-2017, 05:23 AM   #2
GenoMax
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AFAIK bcl2fastq v.2.18 is only available for linux. Rather than cygwin you could use a virtual machine with unix.

If you are able to use BaseSpace then that may be an option (though I don't have first hand experience with it).
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