convert fgenesh output into gff3 file

[Mondow]

Hello everyone, im a newbie..
I've performed gene prediction using FGENESH (in molquest) on my ~10000 contigs. Ive imported my contigs in batch and the output files that ive got in a form of txt files containing the information of predicted gene (of all contigs) in a single file(as attached). How am i going to split those information into separate file or how am i going to convert it to gff3 file. There are too many contigs so theres no way im gonna do it manually

[bernardo_bello]

Hi,

Maybe:

Tab -> Genbank -> GFF3

Look there:

Genbank -> GFF3

GFF Toolkit (v0.1) http://galaxy.raetschlab.org/

Tab -> Genbank

converter http://sequenceconversion.bugaco.com...ogy/sequences/

molbiol-tools.ca http://molbiol-tools.ca/Convert.htm

-------------------------

Bernardo

[sgcsd]

Hi
I am looking an answer for the same question..or similar question. I am looking for a script or tool which can parse the fgenesh result from mutiple sequences run and give the output as gff3 or the sequences of predicted proteins.

Thank you in advance