Hi,
I have just begun assembling genomes with velvet. I am new to de novo assembly and have been told the "auto" setting for -cov_cutoff and -exp_cov parameters are reliable for use. However, I have had some issues with auto setting for insert length.
Therefore, I was wondering if veteran velvet users have found that the auto setting for -cov_cutoff and -exp_cov are reliable or should I really spend the extra effort to work out the proper values for these parameters.
Cheers
I have just begun assembling genomes with velvet. I am new to de novo assembly and have been told the "auto" setting for -cov_cutoff and -exp_cov parameters are reliable for use. However, I have had some issues with auto setting for insert length.
Therefore, I was wondering if veteran velvet users have found that the auto setting for -cov_cutoff and -exp_cov are reliable or should I really spend the extra effort to work out the proper values for these parameters.
Cheers
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