Hi I am comparing two Bam files with cuffdiff but I get the following error.
Error: sort order of reads in BAMs must be the same
I use bowtie to produce sam files, convert them to bam and sort them with samtools.
I inspected the sam files and the order seems to be the same in both files. Not sure whats going on.
Can any one help? thanks in advance.
Error: sort order of reads in BAMs must be the same
I use bowtie to produce sam files, convert them to bam and sort them with samtools.
I inspected the sam files and the order seems to be the same in both files. Not sure whats going on.
Can any one help? thanks in advance.
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