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  • Reading Summary information

    What are considered "good" ranges for intensity and % alignment?

  • #2
    GERALD summary information

    I am referring to the GERALD summary information and what are considered to be "good" ranges. Is there any documentation on this? I am not running the sample, just receiving the fastq files.

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    • #3
      Thanks

      Thanks for all your help.
      Some friends at WashU answered my questions.

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      • #4
        I am working with at lab that will be doing pharmacogenetic assays using MiSeq. Getting the genotypes will be straightforward but copy number detection for CYP2D6 is a challenge on any platform because of confusion with CYP2D7. Does anyone know if there is a recommended way of estimating copy numbers with MiSeq?

        Thanks,
        Don Rule
        Translational Software

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