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Old 10-27-2013, 08:37 PM   #1
hugomarquez
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Default Making comparison of lowly expressed transcripts

I have been give a project where I need to compare the expression pattern of a lot of lowly expressed transcripts. As I know, Cufflinks discard those transcripts directly thus can't be used. Does anyone have any suggestions? Thanks!
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Old 10-28-2013, 02:24 AM   #2
dpryan
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You could just use one of the count-based methods (edgeR/DESeq/etc.) and just not do any filtering.
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Old 10-31-2013, 04:24 PM   #3
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Thanks so much!
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