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Old 01-14-2011, 10:14 AM   #1
madsaan
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Location: california

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Default Novoalign parameters

Hi,

I am new to novoalign and totally lost with so many parameters for aligning my transcriptome with reference genome.Which parameters are the most important and how do i go about deciding which values to use for each parameter?

Thanks,
Joji
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Old 10-03-2011, 06:34 PM   #2
sparks
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http://www.novocraft.com/wiki/tiki-i...page_ref_id=35
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