Hi!
Say you have a new cell type thats never been RNA sequenced, but from a known species. How you go about it after Tophat2->Cufflinks?
I started out sorting by FPKM just to see whats high/low/not expressed.
Now I want to facilitate further analysis for my supervisor:
a. Using bioDB.net, finding protein/non-protein coding genes
b. GO terms for each gene
c. Ideas?
Problem is that bioDB.net has an input limit far below the number of genes I have...
Also, is there a way of making each gene symbol into a hyperlink (in Excel) directly to a search in PubMED gene for this gene? Or equal/better solution?
Thank you so much!
Say you have a new cell type thats never been RNA sequenced, but from a known species. How you go about it after Tophat2->Cufflinks?
I started out sorting by FPKM just to see whats high/low/not expressed.
Now I want to facilitate further analysis for my supervisor:
a. Using bioDB.net, finding protein/non-protein coding genes
b. GO terms for each gene
c. Ideas?
Problem is that bioDB.net has an input limit far below the number of genes I have...
Also, is there a way of making each gene symbol into a hyperlink (in Excel) directly to a search in PubMED gene for this gene? Or equal/better solution?
Thank you so much!
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