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Old 10-27-2012, 05:03 PM   #1
Junior Member
Location: Ancona

Join Date: Oct 2012
Posts: 3
Default Subject organism name from Blastp result

Hi everyone,
I have a set of proteins ID that i'm blasting locally using blastp and the new blast+ program.

The problem is that I cannot retrieve in any way the name of the organism to whoch the subject id refers.

It would be wonderfull if I could find a way to get the full description appear for the subject sequence (instead of truncated one) or blast the obtained gi from the tabular output (-outfmt 7) and obtain the organism name.

Any suggestions??

Thanks all!!!

dgio is offline   Reply With Quote
Old 10-29-2012, 05:18 AM   #2
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543

You are not alone:

Please email the NCBI and tell them this is important, and it might help encourage them to actually implement it.
maubp is offline   Reply With Quote

blast+, output, taxonomy

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