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Old 03-18-2010, 03:01 AM   #1
avilella
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Location: uk

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Default distance measure to compare peak set profiles in chip-seq datasets

Hi,

Is there any tool that will tell me how different/similar two chip-seq peak sets are in two different parts of the genome?

E.g. if I have a ~10Kb region in the genome with a series of peaks and another ~10Kb region in the genome with another set of peaks from the same experiment, can I calculate a distance measure between these two peak set profiles with any available tool?

Cheers
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