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Old 03-25-2010, 02:52 AM   #1
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Location: Sweden, Uppsala

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Default format indelse file MAQ


I tried to find information about the meaning of the different columns in the indelse file from MAQ shown below:

canFam2_chr11:67458971-67586210 795 0 10 2 6 -2

Hope someone can help?
katarina is offline   Reply With Quote
Old 03-25-2010, 03:18 AM   #2
Location: sweden

Join Date: Feb 2010
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u can see it in maq reference manual.

maq indelsoa

The output is also TAB delimited with each line consisting of chromosome, approximate coordinate, length of the abnormal region, number of reads mapped across the position, number of reads on the left-hand side of the position and number of reads on the right-hand side. The last column can be ignored.
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