SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Updated How to convert .txt file to .bed .GFF or .BAR file format, forevermark4 Bioinformatics 2 06-30-2014 06:02 AM
For MAQ: Is there a Tool to convert sanger-format fastq file to illumina-fotmat fastq byb121 Bioinformatics 6 12-20-2013 02:26 AM
the format of output file of Maq zcrself Bioinformatics 2 03-18-2010 12:09 AM
can mapview format convert to map format of MAQ chenw Illumina/Solexa 4 07-25-2009 12:28 AM
Help convert maq map format to eland format hard998 Bioinformatics 0 07-20-2009 08:37 PM

Reply
 
Thread Tools
Old 03-25-2010, 02:52 AM   #1
katarina
Junior Member
 
Location: Sweden, Uppsala

Join Date: Jun 2009
Posts: 1
Default format indelse file MAQ

Hi,

I tried to find information about the meaning of the different columns in the indelse file from MAQ shown below:

canFam2_chr11:67458971-67586210 795 0 10 2 6 -2

Hope someone can help?
katarina is offline   Reply With Quote
Old 03-25-2010, 03:18 AM   #2
saima
Member
 
Location: sweden

Join Date: Feb 2010
Posts: 15
Default

u can see it in maq reference manual.

maq indelsoa

The output is also TAB delimited with each line consisting of chromosome, approximate coordinate, length of the abnormal region, number of reads mapped across the position, number of reads on the left-hand side of the position and number of reads on the right-hand side. The last column can be ignored.
saima is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:42 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO