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Old 04-08-2019, 02:19 AM   #1
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Location: World

Join Date: Apr 2019
Posts: 5
Default RepeatScout errors

Hello everybody
I was trying to use RepeatScout. I was following some steps one by one to analyze my sequences.
Here there are the passages:

Repeatscout run: using `fname.fa`

1) `./build_lmer_table -l 15 -sequence fname.fa -freq fname.freq`

2) `./RepeatScout -sequence fname.fa -output fnamescout.fa -freq fname.freq -l 14`

Then the next step would be:

3) `cat fnamescout.fa | ./filter-stage-1.prl> fnamescout_filtered.fa`

but it generated an empty output file .fasta

I checked if `TRF` was installed, then I installed `NSEG`. It could be okay.
What's wrong?

Last edited by fripeki; 04-10-2019 at 06:36 AM. Reason: update
fripeki is offline   Reply With Quote

error, fasta, genome analysis, repeatscout, software

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