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Old 02-12-2011, 04:58 PM   #1
Junior Member
Location: France

Join Date: Jan 2011
Posts: 5
Default MAQ Simulator SNP/Indel Output

One of the output generated by maq simulate (haploid mode)
looks like this:

chr22   16068102        C       M       +
chr22   16068255        A       R       +
chr22   16069235        G       A       -
In the fourth column you found bases that are not always ATCG,
in the above case: M and R.

What are they?

Is there a way to convert those bases into ACGT?
peveralldubois is offline   Reply With Quote
Old 02-12-2011, 07:30 PM   #2
Location: Connecticut

Join Date: Jun 2009
Posts: 74

definitely, google IUPAC nucleotide codes and you'll find out
csoong is offline   Reply With Quote

maq snp indel simulation

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