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Old 12-15-2008, 07:25 AM   #1
soniat
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Location: Cambridge

Join Date: Oct 2008
Posts: 2
Default Maq output: assemble.log file contains what?

I'm trying to figure out what the numbers in this file represent, in particular the table that starts like this:

CC qual cover cover_sum hom hom_sum het het_sum
CC
S1 99 1182088 1182088 401 401 87 87
S1 98 1615 1183703 0 401 2 89

the maq manual says this file provides coverage information, but doesn't describe the contents beyond that.
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