Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Free Genomics Data Reference Library for the Community

    In order to accelerate our understanding of the molecular basis of diseases such as cancer, it is imperative for the research community to be able to work with large cohorts of patient-derived genomics data generated by consortium efforts like The Cancer Genome Atlas (TCGA) and the Genotype Tissue Expression (GTEx) Project.

    Station X is making it free & easy to rapidly mine large cohorts of patient-derived genomics data. GenePool Reference™ is a free and growing resource where human genomics data tied to corresponding clinical metadata is available for analysis and interpretation.

    Simply register free-of-charge (http://www.stationxinc.com/) and get access to:

    * 7,000+ samples worth of whole genomes, exomes, targeted sequencing panels, and transcriptomes including TCGA and GTEx projects, with more on the way driven by user requests
    * Associated clinical metadata such as demographic, treatment, recurrence, and other features
    * Built-in, best-in-class analysis & statistical tools such as profiling, comparison, time-to-endpoint, co-expression networks, gene-set enrichment, and clustering
    * Interactive visualizations
    * Built-in, dynamic annotations

    For more information about GenePool Reference™ and the various genomics cohorts available, please click here (http://www.stationxinc.com/reference-library).

    If you are interested in using GenePool with your own genomics data, simply check out http://www.stationxinc.com to find out how.

    GenePool is Station X’s software environment for the management, analysis and sharing of cohort-scale genomics data. GenePool makes it easy for translational and clinical researchers to make sense of mutation and expression data derived from sequencing platforms.
    Last edited by GenePool; 11-22-2014, 12:16 AM.

  • #2
    The Cancer Genome Atlas (TCGA) comprehensively available in GenePool

    Station X has recently made The Cancer Genome Atlas comprehensively available instantly for users of GenePool.

    GenePool now provides instant access to the following TCGA assays:

    *Somatic Mutations (per patient derived from exome sequencing of Tumor and matched Blood-Normal sample)
    *RNA-Seq (genes, isoforms, exons, splice junctions)
    *miRNA-Seq
    *Protein Expression (array-based)
    *DNA Methylation (chip-based)
    *Copy Number (chip-based)

    Check out the following SeqAnswers thread for more information:

    Registered SEQanswers sponsors/vendors can post commercial content here. Please support our sponsors!


    ------------------------------
    GenePool is making genomics data management, analysis, and sharing easier!
    Products @ www.stationxinc.com
    Last edited by GenePool; 11-23-2014, 09:27 PM.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM
    • seqadmin
      Strategies for Sequencing Challenging Samples
      by seqadmin


      Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
      03-22-2024, 06:39 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    27 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    30 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 09:21 AM
    0 responses
    26 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-04-2024, 09:00 AM
    0 responses
    52 views
    0 likes
    Last Post seqadmin  
    Working...
    X