SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Alignment to b37 with decoy sequences Michael.James.Clark Bioinformatics 4 12-14-2011 04:33 PM
extract alignment from SAM with a GFF file NicoBxl Bioinformatics 4 08-02-2011 02:45 PM
.SAM to .BAM with SAM file header @PG emilyjia2000 Bioinformatics 13 06-14-2011 01:21 PM
Needed: GAPed alignment tool to save my sequences from the SMART kit dagarfield Bioinformatics 3 12-10-2010 06:58 AM
BWA: specifying SAM/BAM file header fields before read alignment? nora Bioinformatics 3 12-04-2010 10:11 PM

Reply
 
Thread Tools
Old 05-05-2011, 01:10 AM   #1
Alex8
Member
 
Location: Europe

Join Date: Oct 2010
Posts: 10
Default Drag-and-drop alignment of sequences to form SAM file

Hello,

I have a reference genome and several short sequences that I want to align to it to certain positions - manually, by drag-and-drop) without any mapping algorithm, so that I can visually compare them. Please let know of software for Linux that allows such function.
The result should be SAM file inspectable in viewers like Tablet.

Regards,
Alexander
Alex8 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:21 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO