Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
RNA-Seq: SpliceTrap: a method to quantify alternative splicing under single cellular Newsbot! Literature Watch 0 09-08-2011 03:00 AM
Solas - Alternative Splicing analysis Thomas Doktor Bioinformatics 1 08-04-2011 08:15 AM
RNA-Seq: RNA-Seq Analysis of Gene Expression and Alternative Splicing by Double-Rando Newsbot! Literature Watch 0 03-03-2011 03:00 AM
Alternative splicing analysis from Next Generation Sequening manindra Bioinformatics 0 07-16-2010 05:32 AM
Science, DGE: A Global View of Gene Activity and Alternative Splicing by Deep Sequenc kmay Literature Watch 0 08-01-2008 05:50 AM

Thread Tools
Old 11-03-2011, 01:32 AM   #1
Senior Member
Location: Germany

Join Date: May 2010
Posts: 149
Question single gene alternative splicing analysis

Hi everybody,

we are interested in analysing the possibilities of alternative splicing and different transcript length of a single gene.

For that I would like to download some RNA-seq data from human and mouse.

Do I need to download a complete data set (transcriptome) or is there a way to concentrate only on the location of the wanted gene?

Can someone recommend a software to do that kind of analysis. Can I use cufflink/cuffdiff to analyse it?

Thanks a lot in advance
frymor is offline   Reply With Quote

alternative splicing, rna-seq, transcriptome analysis

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:17 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO