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Old 03-28-2012, 12:46 PM   #1
odoyle81
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Location: United States

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Default tool to determine sequence divergence based on snp density?

Is there a tool that I can use to determine snp density and estimate sequence divergence between two samples?

I have vcf files if that helps. Basically I want to determine how many snps per 1000 bases I have.

Thanks!
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