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Hi,
we would like to point the community to a web tool we have recently developed.
DARIO is a web service for the analysis of short RNAs from high throughput sequencing data. It features
Files can be uploaded in BED or BAM format. The website currently supports seven assemblies of six species: human (hg18, hg19), rhesus monkey (rheMac2), mouse (mm9), fruit fly (dm3), worm (ce6) and zebrafish (danRer6).
Any comments and suggestions appreciated.
URL: http://dario.bioinf.uni-leipzig.de/
we would like to point the community to a web tool we have recently developed.
DARIO is a web service for the analysis of short RNAs from high throughput sequencing data. It features
- fast and convenient analysis of small RNA-seq data (short RNA-seq protocol)
- no dependencies to any sequencing platform or mapping tool (convert from common SAM format)
- differential expression: direct comparison of expressions from several DARIO runs due to RPM normalization
- upload of own annotations or regions of interest
- prediction of new putative ncRNAs using a machine learning approach
- additional validation of predicted ncRNAs using RNAz
Files can be uploaded in BED or BAM format. The website currently supports seven assemblies of six species: human (hg18, hg19), rhesus monkey (rheMac2), mouse (mm9), fruit fly (dm3), worm (ce6) and zebrafish (danRer6).
Any comments and suggestions appreciated.
URL: http://dario.bioinf.uni-leipzig.de/