I'm guessing one of the existing packages out there will do this, but haven't quite found it. If I have aligned paired-end / mate-pair data, what open source tool(s) will compute the mean & stddev of the distances between pairs?
I may just write a Perl one as an exercise, but even then it will be useful to have a comparator.
I may just write a Perl one as an exercise, but even then it will be useful to have a comparator.
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