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Old 08-14-2012, 08:52 PM   #1
hc_2011
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Location: Beijing

Join Date: Feb 2012
Posts: 1
Default SOAPsnp install problems

I tried to use SOAPsnp to call SNPs for RNA-seq data. When I used "make all" to install the SOAPsnp, it come out such words:

g++ -fomit-frame-pointer -O3 -ffast-math -funroll-loops -mmmx -msse -msse2 -msse3 -fmessage-length=0 -c -o call_genotype.o call_genotype.cc
In file included from call_genotype.cc:1:
soap_snp.h:12:51: error: boost/iostreams/filtering_streambuf.hpp: No such file or directory
soap_snp.h:13:36: error: boost/iostreams/copy.hpp: No such file or directory
soap_snp.h:14:43: error: boost/iostreams/filter/gzip.hpp: No such file or directory
make: *** [call_genotype.o] Error 1

I think it maybe have something wrong with the "boost", however I can not find an effective way to fix it,.Can anybody help me to install SOAPsnp? Thank you
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Old 09-23-2012, 10:30 PM   #2
logicthief
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Location: California

Join Date: Jan 2012
Posts: 11
Default

I'm not sure whether you have solved your problem, in case you haven't, here's what I did:

Code:
wget http://sourceforge.net/projects/boost/files/boost/1.51.0/boost_1_51_0.tar.gz/download
tar zxvf boost_1_51_0.tar.gz
export CPLUS_INCLUDE_PATH="absolute_path_to_boost/boost_1_51_0"
then go to SOAPsnp directory and do 'make all' again. Basically, I just added the boost library pool to the default lib searching path.
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Old 10-04-2012, 07:06 AM   #3
qtl
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Location: Norway

Join Date: Oct 2012
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Default Install the boost-devel package will solve your problem better

In Fedora,
sudo yum install boost-devel

In Ubuntu
sudo apt-get install libboost1.48-dev

I was searching answers of this question and met this
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Old 07-04-2014, 03:51 AM   #4
xiangwulu
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Location: ireland

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Default

Quote:
Originally Posted by qtl View Post
In Fedora,
sudo yum install boost-devel

In Ubuntu
sudo apt-get install libboost1.48-dev

I was searching answers of this question and met this


This works, thanks.
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