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Old 09-14-2011, 04:05 AM   #1
sklages
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Default LIMS (again)

Hi,

there were several inquiries in the past about open source LIMS which can be used in NGS. There are few, one software which looks very promising (to me) is GNomEx, http://www.biomedcentral.com/1471-2105/11/455

Is someone running GNomEx in a production environment and could share their experience?

I am looking for some LIMSoid software managing NGS samples and runs (not necessarily the run data itself). Any other (free) software to recommend?

thanks, Sven
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Old 09-14-2011, 05:02 AM   #2
fkrueger
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We are successfully running a home-made solution (Sierra) for some time now. It is simple, very straight forward to use and really saves lots of time trying to organise tons of data. You can take a look at http://www.bioinformatics.bbsrc.ac.uk/projects/sierra/.
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Old 09-14-2011, 06:17 AM   #3
sklages
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Quote:
Originally Posted by fkrueger View Post
We are successfully running a home-made solution (Sierra) for some time now. It is simple, very straight forward to use and really saves lots of time trying to organise tons of data. You can take a look at http://www.bioinformatics.bbsrc.ac.uk/projects/sierra/.
Thanks for the link, I will have a look. Looks promising as well :-)

Last edited by sklages; 09-14-2011 at 06:18 AM. Reason: typo
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Old 09-15-2011, 11:45 AM   #4
james hadfield
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Has anyone looked at Galaxy LIMs?
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Old 09-20-2011, 10:15 AM   #5
tnabtaf
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Galaxy does not support a full-blown LIMS, but it does support sample tracking, which sounds like it may be some of what you are looking for.

Links:
http://main.g2.bx.psu.edu/u/rkchak/p/sts
http://galaxyproject.org/wiki/Learn/...ample_Tracking
http://main.g2.bx.psu.edu/u/rkchak/p/sts-screencasts
http://galaxyproject.org/wiki/Admin/...ple%20Tracking
http://wiki.g2.bx.psu.edu/Admin/Samp...ing/Next%20Gen
http://vimeo.com/24868944
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Old 04-30-2013, 05:50 AM   #6
KOL
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I case you are interested in a simple and free sample tracking system have a look at http://sourceforge.net/projects/onco...urce=directory
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Old 04-30-2013, 06:05 AM   #7
sklages
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Will give it a try soon; currently my "favorite" is openBIS.
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