SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
QUAL vs GQ in GATK kasthuri Bioinformatics 1 06-20-2012 12:01 AM
GATK VariantRecalibrator tomato2 Bioinformatics 1 05-06-2012 03:28 AM
one question in GATK evonne16 General 4 02-01-2012 04:47 PM
FS tag in GATK ulz_peter Bioinformatics 0 10-10-2011 12:42 AM
GATK help! adaptivegenome Bioinformatics 0 01-17-2011 07:01 PM

Reply
 
Thread Tools
Old 11-02-2012, 07:38 PM   #1
bewlib
Junior Member
 
Location: china

Join Date: Oct 2012
Posts: 9
Default About GATK

who can tell me how can i use GATK to filter the SNPs that have reported in dbSNP database?? Thanks!!
bewlib is offline   Reply With Quote
Old 11-03-2012, 07:00 PM   #2
vdauwera
Member
 
Location: Boston, MA

Join Date: Apr 2012
Posts: 42
Default

The best place to get answers about using GATK is the GATK forum here:

http://gatkforums.broadinstitute.org/

But be sure to read the documentation here first:

http://www.broadinstitute.org/gatk/guide/
vdauwera is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 10:42 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO