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Old 05-27-2013, 07:13 AM   #1
dreaming
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Location: canada

Join Date: May 2013
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Default Using multiple genome aligner and outputing SNP file

Hi everyone,

I'm looking for a multiple genome aligner that outputs a file containing all the positions of the SNPs. I've tried using Mauve, but their commandline tool doesn't output the SNP positions, and I don't want to use their GUI because it needs to be automated.

Does anyone know what software I should use?
Thanks in advance.
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