Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Aligner for SNP calling honey Bioinformatics 7 05-17-2012 01:00 PM
Mosaik-aligner for SNP detection, Need Help. ketan_bnf Bioinformatics 2 12-22-2010 09:17 PM
Aligner/SNP caller for Illumina data sklages Bioinformatics 2 10-06-2010 04:48 AM
Aligner that outputs H2 flag in SAM file phalaenopsis Bioinformatics 0 08-04-2010 05:14 AM

Thread Tools
Old 05-27-2013, 07:13 AM   #1
Junior Member
Location: canada

Join Date: May 2013
Posts: 1
Default Using multiple genome aligner and outputing SNP file

Hi everyone,

I'm looking for a multiple genome aligner that outputs a file containing all the positions of the SNPs. I've tried using Mauve, but their commandline tool doesn't output the SNP positions, and I don't want to use their GUI because it needs to be automated.

Does anyone know what software I should use?
Thanks in advance.
dreaming is offline   Reply With Quote

aligner, mauve, snp

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 04:38 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO