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Old 08-04-2019, 08:16 PM   #1
cryptodice
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Location: Bangalore, India

Join Date: Apr 2018
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Default Problem in mpileup file where size of sequence does not match size of quality

Hi everyone,
I am using an mpileup file given to us by a service provider from our data, when I am processing with downstream analyses, it is showing me an error like:
size of sequence does not equal size of quality: AaAaAaAAAAAAAAaAAaaAAaaaAAaAaaAaAAaaaaaaaaAAaaaAAAAAaAAaaaAAAAAAAAAAaaAaaaaAaaaAaAAaaAaAAaaaaaaAAAAAaaaaaA, IJ<JJJJFJAJFJJFJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJF7JJJJAJJJ<JJJJFJJJJJJJJJJJJJJJFJJJJJJJJJFJJJJ

Can I get some help on how to fix this?
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