hi,
When I using Cufflinks-Cuffcompare-Cuffdiff to analysis my RNA-seq data, I found a question.
In cuffdiff output file, gene_exp.diff, usually "A gene name" have more than one different locus even in different chr.
It make me confused, it isn't a gene have a record in gene_exp.diff ?
like gene U6, in gene_exp.diff, they have
thanks,
song
When I using Cufflinks-Cuffcompare-Cuffdiff to analysis my RNA-seq data, I found a question.
In cuffdiff output file, gene_exp.diff, usually "A gene name" have more than one different locus even in different chr.
It make me confused, it isn't a gene have a record in gene_exp.diff ?
like gene U6, in gene_exp.diff, they have
Code:
XLOC_000130 XLOC_000130 U6 chr1:23488591-23489575 q1 q2 NOTEST 1.17921 0.489751 -1.2677 1.41199 0.157954 1 no XLOC_007133 XLOC_007133 U6 chr10:29046365-29050865 q1 q2 NOTEST 0.715357 0.493826 -0.534662 0.598727 0.549355 1 no XLOC_011686 XLOC_011686 U6 chr12:51556268-51557200 q1 q2 NOTEST 1.89382 0.749147 -1.33798 1.87499 0.0607936 1 no XLOC_014629 XLOC_014629 U6 chr13:73454957-73456810 q1 q2 NOTEST 0.946175 0.166244 -2.50881 2.26666 0.0234107 no XLOC_057577 XLOC_057577 U6 chr9:556306-562036 q1 q2 NOTEST 2.21376 1.26377 -0.808767 1.98748 0.0468697 1 no XLOC_057725 XLOC_057725 U6 chr9:97269425-97271417 q1 q2 NOTEST 1.39023 0.61348 -1.18024 2.1936 0.0282639 1 no XLOC_060262 XLOC_060262 U6 chrX:123007615-123008869 q1 q2 NOTEST 1.20754 0.364642 -1.72752 1.98409 0.0472457 no
song
Comment