SEQanswers

Go Back   SEQanswers > Literature Watch



Similar Threads
Thread Thread Starter Forum Replies Last Post
SOLiD Accuracy Enhancement Tool (SAET) multicore and ref genome size questions KevinLam Bioinformatics 11 08-31-2012 08:54 AM
1000 genome data and other human ref sequence differ johnadam33 Bioinformatics 4 01-05-2011 02:16 AM
In Sequence: Max Planck Institutes, NIEHS, NCGR, Personal Genome Project, Applied Bio Newsbot! Illumina/Solexa 0 10-28-2008 01:17 PM
In Sequence: Illumina, Avantome, Roche, 454 Life Sciences, Applied Biosystems, InteRN Newsbot! Illumina/Solexa 0 07-22-2008 01:06 PM
Invitrogen to Acquire Applied Biosystems for $6.7B ECO SOLiD 3 06-20-2008 03:10 PM

Reply
 
Thread Tools
Old 10-20-2008, 07:53 PM   #1
ECO
--Site Admin--
 
Location: SF Bay Area, CA, USA

Join Date: Oct 2007
Posts: 1,355
Default SOCS: Efficient mapping of Applied Biosystems SOLiD sequence data to a ref genome...

Bioinformatics. 2008 Oct 7. [Epub ahead of print]

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications.
Ondov B, Varadarajan A, Passalacqua KD, Bergman NH.

School of Biology, Georgia Institute of Technology, 310 Ferst Dr., Atlanta, GA 30332-0230.

SUMMARY: Here we report the development of SOCS (Short Oligonucleotide Color Space), a program designed for efficient and flexible mapping of Applied Biosystems SOLiD sequence data onto a reference genome. SOCS performs its mapping within the context of 'color space', and it maximizes usable data by allowing a user-specified number of mismatches. Sequence census functions facilitate a variety of functional genomics applications, including transcriptome mapping and profiling, as well as ChIP-Seq. AVAILABILITY: Executables, source code, and sample data are available at http://socs.biology.gatech.edu/ CONTACT: nickbergman(<AT>)gatech.edu SUPPLEMENTARY INFORMATION: Available at Bioinformatics online.
ECO is offline   Reply With Quote
Reply

Tags
abi, assembly, colorspace, mapping, solid

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:50 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO