Hi All,
I am working with canFam2 data. The commands used are:
canFamrefGene <- makeTranscriptDbFromBiomart(biomart="ensembl",dataset="cfamiliaris_gene_ensembl")
exonRangesList <- exonsBy(canFamrefGene, "gene")
the data is not sorted per chromosome in the exonRangesList object. This is later giving me problems with countOverlaps function.
Can someone please help.
I am working with canFam2 data. The commands used are:
canFamrefGene <- makeTranscriptDbFromBiomart(biomart="ensembl",dataset="cfamiliaris_gene_ensembl")
exonRangesList <- exonsBy(canFamrefGene, "gene")
the data is not sorted per chromosome in the exonRangesList object. This is later giving me problems with countOverlaps function.
Can someone please help.