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Old 02-03-2011, 03:52 AM   #1
semna
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Default download set of genes??

Hi,
I like to know how can download set of genes (annotated introns)(bed file format) of pig either from UCSC or Ensembl.Thanks in advance.
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Old 02-03-2011, 09:03 AM   #2
danielr
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Try the UCSC table browser, it can give bed output
http://moma.ki.au.dk/genome-mirror/c...ta_group=genes
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Old 02-03-2011, 10:03 AM   #3
semna
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Hi
Thanks for your response but my problem is in choosing track,group and table in this link that you introduced.also after enter get output, in the second page has different option. For my interest which of option should I use?Thanks
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Old 02-07-2011, 12:37 PM   #4
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group: Genes and gene predictions
table: ensGene
track: Ensembl
output format: BED

next page, choose Whole gene

this will give you the ensembl gene annotation for pig in 12-column bed format

choose Introns on 2nd page if you want a one line per intron instead
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