As we probably all know, Casava can be made to run in parallel on SGE (sun grid engine). Is it possible to have it use PBS instead? The commands are similar (e.q., qsub, qstat) yet frustratingly different in the option details.
Modifying or adding to:
CASAVA/lib/CASAVA-1.7.0/perl/Casava/TaskManager
should do the trick. But if someone else has already done the modification then I would prefer to use that. BTW, Illumina support only recommends SGE and does not seem to be interested in supporting PBS.
Thanks.
Modifying or adding to:
CASAVA/lib/CASAVA-1.7.0/perl/Casava/TaskManager
should do the trick. But if someone else has already done the modification then I would prefer to use that. BTW, Illumina support only recommends SGE and does not seem to be interested in supporting PBS.
Thanks.
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