I am trying '-G' option with '-T' which said transcriptome only.
I notice with '-T' option, less genes were output by TopHat, but it is some hard to conclude how '-T' picks up genes.
Does any one have idea how '-T' option works?
I notice with '-T' option, less genes were output by TopHat, but it is some hard to conclude how '-T' picks up genes.
Does any one have idea how '-T' option works?