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Old 09-20-2013, 10:06 AM   #1
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Default How does TopHat -T option work?

I am trying '-G' option with '-T' which said transcriptome only.
I notice with '-T' option, less genes were output by TopHat, but it is some hard to conclude how '-T' picks up genes.
Does any one have idea how '-T' option works?
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