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  • what is the meaning of BED score?

    Hi guys,
    anyone who knows the BED format score meaning. The UCSC said the score is the gray of track when plot in the UCSC genome,
    but I want to know how the score is calculated and what is the indication.
    any help will be appreciated, thank you very much!


    Johnny

  • #2
    Hi whfwind,
    I think your question was asked before:

    Originally posted by Thomas Doktor View Post
    In this context the relevance of the score is usually to represent read depth. The actual biological meaning of this depends on the experiment you are performing, for instance the score and hence read depth in a ChIP-seq could reflect binding affinity, in an RNA-seq it could reflect expression levels and in a normal DNA-seq it could reflect copy number.
    Ilia

    Comment


    • #3
      Originally posted by zhidkov.ilia View Post
      Hi whfwind,
      I think your question was asked before:



      Ilia
      Hey, i have a question too related to this problem.. Can I ask here?

      Comment


      • #4
        Originally posted by Anna928 View Post
        Hey, i have a question too related to this problem.. Can I ask here?
        Post it in a new thread rather than reviving one from 6 years ago.

        Comment

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