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Old 02-20-2012, 02:58 AM   #1
jorge
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Default visualize CCAT peaks in UCSC browser

Hello,

I have obtained a list of significant peaks by running chip-seq data on CCAT. Now my question is:

How could I load the CCAT output onto the UCSC browser?

Thanks
Jorge
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Old 02-20-2012, 03:19 AM   #2
GenoMax
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What format is your result data in (bed/bam)?

Depending on the answer you may either be able to visualize the data in UCSC browser directly or would need to do some post-processing (e.g. with bedtools).
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Old 02-20-2012, 04:34 AM   #3
jorge
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Hi,

CCAT output is TSV but does not have the same fields as the original BED files used as CCAT input.

Yes, I guess I'll have to process the CCAT output so the look like BED files.

Thanks
Jorge
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