Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
tophat pair end reads damiankao Bioinformatics 4 04-18-2013 09:36 PM
Overlapping and non-Overlapping pair-end reads with Tophat senpeng Illumina/Solexa 4 10-16-2011 06:43 PM
tophat pair end input damiankao Bioinformatics 0 03-23-2011 08:06 AM
Difference between mate pair and pair end bassu General 2 06-19-2010 06:13 AM

Thread Tools
Old 02-20-2012, 08:02 AM   #1
Xiaomin Yu
Junior Member
Location: Washington DC

Join Date: Jul 2011
Posts: 4
Default TopHat pair-end RNAseq statistics

I am analyzing pair-end RNAseq with tophat, I want to know how many fragments (paired) mapped to sense/antisense of the reference sequencing, and how many single reads (not paired) mapped to sense/antisense of the reference, what's tools I could use for this purpose?

Xiaomin Yu is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 04:47 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO