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Old 02-20-2012, 08:02 AM   #1
Xiaomin Yu
Junior Member
 
Location: Washington DC

Join Date: Jul 2011
Posts: 4
Default TopHat pair-end RNAseq statistics

Hi,
I am analyzing pair-end RNAseq with tophat, I want to know how many fragments (paired) mapped to sense/antisense of the reference sequencing, and how many single reads (not paired) mapped to sense/antisense of the reference, what's tools I could use for this purpose?
Thanks.

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