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Old 02-20-2012, 09:22 AM   #1
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Post convention of representing alleles in a BED file

Does anyone know what is the convention of representing alleles in a BED file. For a given genomic coordinate, should the alleles be always represented according to positive strand? (even if we are refering to a variant on the negative strand?)

Any answer is greatly appreciated.

Thank you.
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allele on bed files

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