Hi!
So, I'm trying to analyse and subsequently map the data deposited with the following paper:
I have downloaded and 'fastq-dump'ed the ChIP-Seq files and have also run a fastqc for quality scores. Now as these reads are raw, they still need adapter trimming and filtering. However, I am unable to figure out what adapter sequence to use for trimming.
I am putting up this question here because the paper states,
Help!
So, I'm trying to analyse and subsequently map the data deposited with the following paper:
I have downloaded and 'fastq-dump'ed the ChIP-Seq files and have also run a fastqc for quality scores. Now as these reads are raw, they still need adapter trimming and filtering. However, I am unable to figure out what adapter sequence to use for trimming.
I am putting up this question here because the paper states,
Libraries for ChIP-seq were constructed using the NEBNext ChIP-seq kit (New England Biolabs), barcoded, multiplexed, and sequenced on an Illumina MiSeq with a paired-end run type
Help!
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