I have moved to trimmomatic - it does SE and PE as well and in my hands much much faster.
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Originally posted by kga1978 View PostI have moved to trimmomatic - it does SE and PE as well and in my hands much much faster.
Speed is not really a matter for me. If it takes five minutes per lane, fine, if it takes one hour, fine too (considering instrument run time and time for downstream analysis) :-)
Have you compared the results? Similar?
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Originally posted by sklages View PostYes, parameters and/or working principles are poorly documented. I agree, it is really fast.
Are you using fastq-mcf in production?
I'm trying to get some more doc (the developer is very active...)
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