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Old 06-08-2011, 09:34 AM   #1
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Default change max per-sample depth in mpileup


The default max per-sample depth in mpileup (samtools) is set to be 8000; however, for my specific research purpose, I need to increase this number. The -D option seems is not used for change this number, does anybody know how to change this limit? Many thanks!

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Old 01-10-2012, 10:09 AM   #2
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Did this get resolved? I have the same question.
Lindy McBride - Rockefeller University
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mpileup setting, per-sample depth

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