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  • tophat mapping of pair ended library from scriptseq

    Hi, I wonder when I do tophat mapping for library generated by epicenture Scriptseq kit, which "library type" option should I use? Should it be" fr-unstranded"? From the protocol description, looks like the reads from primer 1 is sense and the reads from primer 2 is antisense.Thanks!

  • #2
    I'm not sure which library type should be used, as well.

    Anyone can help?

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