We got BAM files from our service provider on CLC workbench. However, it is not possible to visualize them on both geneious and IGV for some reason. Importation fails in Geneious. I think the issue is with the reference genome. It seems like the FASTA file is not recognised due to some season as being the same one as used for the mapping my CLC. Any suggestions are welcome.
I have sorted the BAM files on SAMTools and generated the bai files, still no results
I have sorted the BAM files on SAMTools and generated the bai files, still no results
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