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Old 10-08-2020, 02:34 PM   #1
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Location: St. Louis

Join Date: Jul 2015
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Default mitochondria in single nuclear RNAseq

for snRNAseq, do people use mitochondrial filtering? I'm not sure if this still makes sense even though we are working with data from nuclei rather than whole cells, but I do see some expression of mito genes in my data.

Also, is it preferable to filter the cells based on mito content or to regress it out?
rtyagi is offline   Reply With Quote

scrnaseq, seurat, single cell rnaseq, snrnaseq

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