Go Back   SEQanswers > Literature Watch

Similar Threads
Thread Thread Starter Forum Replies Last Post
RNA-Seq: DEB: A web interface for RNA-seq digital gene expression analysis. Newsbot! Literature Watch 6 02-06-2012 05:55 AM
RNA-Seq: Synthetic spike-in standards for RNA-seq experiments. Newsbot! Literature Watch 0 08-06-2011 03:00 AM
RNA-Seq: ExpressionPlot: A web-based framework for analysis of RNA-Seq and microarray Newsbot! Literature Watch 0 07-30-2011 04:00 AM
RNA-Seq: Design and validation issues in RNA-seq experiments. Newsbot! Literature Watch 0 04-19-2011 04:10 AM
RNA-Seq: rQuant.web: a tool for RNA-Seq-based transcript quantitation. Newsbot! Literature Watch 0 06-17-2010 03:00 AM

Thread Tools
Old 03-24-2011, 03:10 AM   #1
RSS Posting Maniac

Join Date: Feb 2008
Posts: 1,443
Default RNA-Seq: ExpEdit: a web server to explore human RNA editing in RNA-Seq experiments.

Syndicated from PubMed RSS Feeds

ExpEdit: a web server to explore human RNA editing in RNA-Seq experiments.

Bioinformatics. 2011 Mar 22;

Authors: Picardi E, Mattia D, Carrabino D, Castrignan˛ T, Pesole G

SUMMARY: ExpEdit is a web application for assessing RNA editing in human at known or user specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads (in FASTQ/SRA format) can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing UCSC links for a quick examination of the genomic context. AVAILABILITY: ExpEdit is freely available on the web at CONTACT: SUPPLEMENTARY INFORMATION: supplementary data are available at the journal's web site.

PMID: 21427194 [PubMed - as supplied by publisher]

Newsbot! is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:04 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO