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Old 07-04-2012, 10:08 PM   #1
Junior Member
Location: China

Join Date: Jul 2012
Posts: 4
Question Does cufflink provide the variance of gene/transcript expression?

Dear all

I use the cufflink to calculate the expression of genes/transcripts-level. From the output files, I can obtain the FPKM values, but I don't find the variance of each gene/transcript.
In our downstream analysis, I need use the variance of gene/transcript, so I have some problems:
1) Does cufflink provide variance of gene/transcript expression?
2) If provide, how to obtain the variance by setting cufflink's option?
3) If not provide, how to calculate the variance by myself.

Thank you !!
Leo.Zhang is offline   Reply With Quote

cufflink variance

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