SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Differential transcript expression between different varieties of the same species giorgifm RNA Sequencing 8 12-12-2016 06:21 AM
Cuff gene and transcript IDs ftan RNA Sequencing 0 06-02-2012 05:04 PM
Differential expression from Transcript assembly StopCodon RNA Sequencing 0 02-10-2012 03:55 AM
ChIP-Seq: A regression analysis of gene expression in ES cells reveals two gene class Newsbot! Literature Watch 0 03-05-2011 03:01 AM
Velvet/Oases transcript expression level? simon.jarman@aad.gov.au RNA Sequencing 3 08-11-2010 10:47 AM

Reply
 
Thread Tools
Old 07-04-2012, 10:08 PM   #1
Leo.Zhang
Junior Member
 
Location: China

Join Date: Jul 2012
Posts: 4
Question Does cufflink provide the variance of gene/transcript expression?

Dear all

I use the cufflink to calculate the expression of genes/transcripts-level. From the output files, I can obtain the FPKM values, but I don't find the variance of each gene/transcript.
In our downstream analysis, I need use the variance of gene/transcript, so I have some problems:
1) Does cufflink provide variance of gene/transcript expression?
2) If provide, how to obtain the variance by setting cufflink's option?
3) If not provide, how to calculate the variance by myself.


Thank you !!
Leo
Leo.Zhang is offline   Reply With Quote
Reply

Tags
cufflink variance

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:20 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO