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Old 08-31-2012, 02:53 PM   #1
Aholton
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Default Building a GTF file

How would I go about building a GTF file from either the FASTA file or from this infromation
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Old 09-04-2012, 12:06 AM   #2
TiborNagy
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I think in FASTA there is no enough information to create a GTF file, but genebank files can be converted by this one.
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Old 09-04-2012, 12:16 PM   #3
Aholton
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Thank you very much! I'm starting the process now.
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Old 09-04-2012, 01:19 PM   #4
Aholton
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Default Running Python

Ok I can't seem to get the python program to run, I've moved the file over to our server and tried to run it using the command given -
"cat file.gb | gb2gtf.py > file.gtf"
by inserting my files location for file.gb and then putting the output for file.gtf. I still receive the error -
gb2gtf.py: command not found

*****
Had to include the directory for the program as well
*****

Last edited by Aholton; 09-04-2012 at 01:25 PM. Reason: Solved Issue
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