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Old 12-18-2012, 02:58 PM   #1
enelkinsan
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Default IGV reading .bam

Hi all,
I'm trying to open .bam file in IGV but I keep getting "sorted.bam does not contain any sequence names which match the current genome" error.
I'm slightly puzzled were to look, because I've imported the same genome I used as a reference for bwa and get .bai file for .bam in the same directory as .bam. What am I missing?

Thanks!!
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Old 12-18-2012, 03:09 PM   #2
enelkinsan
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Update: the problem sort of resolved by using Tablet instead of IGV
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