Go Back   SEQanswers > General

Similar Threads
Thread Thread Starter Forum Replies Last Post
MaSuRCA install error Volklor Bioinformatics 6 01-22-2014 07:10 AM
Newbie Question: Calculating physical coverage from genome coverage tristanstoeber Illumina/Solexa 4 06-24-2013 11:53 AM
Comparing Samples with 20Mbp coverage to 40MBP coverage sgoswami RNA Sequencing 0 03-09-2012 08:41 AM
Velvet Assembler: expected coverage versus estimated coverage versus effective covera DMCH Bioinformatics 1 11-30-2011 05:21 AM
low 454 coverage combined with high solexa coverage strob Bioinformatics 7 10-07-2010 11:14 AM

Thread Tools
Old 01-21-2014, 10:57 AM   #1
Junior Member
Location: Chile

Join Date: Aug 2013
Posts: 1
Lightbulb MaSurCa Assembler Coverage.

Hi everybody, im working with a De NOVO plant assembly and i used two differents Assemblers, Mira and Masurca, i got a problem with how to know the real coverage in the MaSurCa analisys, because Masurca made super reads with the reads for make the assembly genome and like the literature say, this one is between 2.X an 4.X for a high coverage Illumina sequencing. My question is if somebody how to calculate the real coverage in the MaSurCa genome assembly?.
J.David is offline   Reply With Quote

genome coverage, masurca, plant genomics

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 12:57 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO