Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
cuffmerge crashes when converting gtf files to sam files swbiggs4 Bioinformatics 20 02-16-2017 09:19 AM
merging fastq files shilo Illumina/Solexa 8 07-06-2016 01:15 PM
Merging bam files memento Bioinformatics 1 02-17-2012 03:39 PM
Merging vcf files kjaja Bioinformatics 0 01-12-2012 11:06 AM
merging 2 sam files papori Bioinformatics 0 07-29-2011 04:44 AM

Thread Tools
Old 02-02-2013, 06:42 AM   #1
Location: Cork

Join Date: Nov 2012
Posts: 13
Default Merging files with Cuffmerge


Can somebody please advise how the Cufflinks output files are merged together with Cuffmerge?

Does the command pool the data into the merged.gtf file?

I am comparing two conditions and I have many input files for each condition. If one file contains a statistical outlier I am concerned that it may skew the results.

Any input would be gratefully appreciated.

Many thanks!
SHeaph is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 01:02 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO