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Old 02-02-2013, 06:42 AM   #1
SHeaph
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Location: Cork

Join Date: Nov 2012
Posts: 13
Default Merging files with Cuffmerge

Hi,

Can somebody please advise how the Cufflinks output files are merged together with Cuffmerge?

Does the command pool the data into the merged.gtf file?

I am comparing two conditions and I have many input files for each condition. If one file contains a statistical outlier I am concerned that it may skew the results.

Any input would be gratefully appreciated.

Many thanks!
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