Hi, there,
I want to do some analysis on a list of genomic regions in mouse and access their conservation by using phastCons scores. I'm a bit confused with different files available on UCSC table browser. For mm9, there are
1. Vertebrate Cons (phastCons30way) and
2. Vertebrate El (phastConsElements30way)
What's the difference between the two? Their table schema is also different.
The Vertebrate Cons has 14 fields and I'm not sure which field has the phastCons score...
The Vertebrate El has only 6 fields with the last filed being score and I guess this is phastCons score?
Also, can I add or average scores from different regions?
Thanks so much!
I want to do some analysis on a list of genomic regions in mouse and access their conservation by using phastCons scores. I'm a bit confused with different files available on UCSC table browser. For mm9, there are
1. Vertebrate Cons (phastCons30way) and
2. Vertebrate El (phastConsElements30way)
What's the difference between the two? Their table schema is also different.
The Vertebrate Cons has 14 fields and I'm not sure which field has the phastCons score...
The Vertebrate El has only 6 fields with the last filed being score and I guess this is phastCons score?
Also, can I add or average scores from different regions?
Thanks so much!
Comment