I am working with population specific re-sequenced genome data from A. lyrata. I need to align it to the reference genome which is already available and then prepare population specific sequence. I will also do variant calling but for now alignment of fragment to reference genome is what I am interested in.
Could anyone suggest of a pipeline/apps combination that would be helpful for this purpose?
Thanks,
Could anyone suggest of a pipeline/apps combination that would be helpful for this purpose?
Thanks,
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