I have determined the snps (after mapping to the reference) and got vcf4 file with snps position within the chromosome
then I used snpEff to look at the effect of these snps BUT which output file includes the position of the snp and its effect (as in the snpeff.txt- only the effect of snps is listed within the gene but it does not refere to the snp position)??
then I used snpEff to look at the effect of these snps BUT which output file includes the position of the snp and its effect (as in the snpeff.txt- only the effect of snps is listed within the gene but it does not refere to the snp position)??
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